FPC Web Tools for Rice, Maize, and Distribution1
|
Descargar SCORM
Este recurso ha sido solicitado 1 veces (0 veces en los últimos 31 días).
Para poder solicitar este recurso debe identificarse como usuario de la biblioteca
|
| |
Ver
Detalles del recurso
|
|
|
FPC Web Tools for Rice, Maize, and Distribution1
|
| Id. |
5082364 |
| Idioma |
inglés
|
| Titulo |
FPC Web Tools for Rice, Maize, and Distribution1 |
| Autor(es) |
Pampanwar, Vishal
Engler, Friedrich
Hatfield, James
Blundy, Steve
Gupta, Gaurav
Soderlund, Carol
|
| Localización |
http://www.pubmedcentral.gov/articlerender.fcgi?artid=1104167
|
| Versión |
1.0 |
| Estado |
Final
|
| Descripción |
Many clone-based physical maps have been built with the FingerPrinted Contig (FPC) software, which is written in C and runs locally for fast and flexible analysis. If the maps were viewable only from FPC, they would not be as useful to the whole community since FPC must be installed on the user machine and the database downloaded. Hence, we have created a set of Web tools so users can easily view the FPC data and perform salient queries with standard browsers. This set includes the following four programs: WebFPC, a view of the contigs; WebChrom, the location of the contigs and genetic markers along the chromosome; WebBSS, locating user-supplied sequence on the map; and WebFCmp, comparing fingerprints. For additional FPC support, we have developed an FPC module for BioPerl and an FPC browser using the Generic Model Organism Project (GMOD) genome browser (GBrowse), where the FPC BioPerl module generates the data files for input into GBrowse. This provides an alternative to the WebChrom/WebFPC view. These tools are available to download along with documentation. The tools have been implemented for both the rice (Oryza sativa) and maize (Zea mays) FPC maps, which both contain the locations of clones, markers, genetic markers, and sequenced clone (along with links to sites that contain additional information).
|
| Palabras clave |
Bioinformatics
|
| Tipo de recurso |
Text
|
| Tipo de Interactividad |
Expositivo
|
| Nivel de Interactividad |
muy bajo
|
| Audiencia |
Estudiante
Profesor
Autor
|
| Estructura |
Atomic |
| Coste |
no
|
| Copyright |
sí
|
|
Copyright © 2005, American Society of Plant Biologists |
| Requerimientos técnicos |
Browser: Any
|
| Fecha de contribución |
24-nov-2006 |
| Contacto |
|
|
|
|
|
Valoración de los usuarios
No hay ninguna valoración para este recurso. Sea el primero en
valorar este recurso.
|
|
|
|
