Assessment of oocyte and trochophore quality in Pacific oyster, Crassostrea gigas - Boulais, Myrina; Corporeau, Charlotte; Huvet, Arnaud; Bernard, Ismael; Quere, Claudie; Quillien, Virgile; Fabioux, Caroline; Suquet, Marc
Pacific oyster hatchery production remains highly variable, partially due to inconsistent gamete quality. However, little attention has been paid to oocyte quality in Pacific oyster compared to important vertebrate aquaculture species such as fishes. The aims of the present study were to identify criteria of oocyte and trochophore quality used as predictive tools for embryo developmental success at the D-larval stage. Twenty-six potential proxies of oocyte and trochophore quality were studied on 25 mature females, as determined using histology. Some morphological and biochemical characteristics of mature oocytes were described. Protein appeared to be the main constituent of fully mature Pacific...
Study of high frequency measurements from the MesuRho mooring - Fuchs, Rosalie; Pairaud, Ivane
The high frequency MesuRho station, part of the MAREL network and located at the mouth of the Rhone River is presented. Measures sometimes show bias signs, drift or double, so that a graphical interface was implemented to quickly visualize data and eventually correct them. Original data set and corrected data for 2009-2013 are presented, the methods of corrections provided are detailed.
Finally an example of a storm event study (under strong south east wind) between the 4th and the 7th of March 2013 is presented and some prospects to improve data management are proposed.
Operational evaluation of the Mediterranean Monitoring and Forecasting Centre products: Implementation and Results - Tonani, Marina; Nilsson, J.a.u; Lyubartsev, Vladyslav; Grandi, Alessandro; Aydogdu, A.; Azzopardi, Joel; Bolzon, G.; Bruschi, A.; Drago, Aldo; Garau, T.; Gatti, Julie; Gertman, Isaac; Goldman, R.; Hayes, Dan; Korres, Gerrakimos; Lorente, P.; Malacic, Vlado; Mantziafou, Anneta; Nardone, G.; Olita, Antonio; Ozsoy, E.; Pairaud, Ivane; Pensieri, S.; Perivoliotis, L.; Petelin, Boris; Ravaioli, M.; Renault, L.; Sofianos, S.; Sotillo, M.g.; Teruzzi, A.; Zodiatis, George
A web-based validation platform has been developed at the Istituto Nazionale di Geofisica e Vulcanologia (INGV) for the Near Real Time validation of the MyOcean-Mediterranean Monitoring and Forecasting Centre products (Med-MFC).
A network for the collection of the in-situ observations, the nested sub-basin forecasting systems model data (provided by the partners of the Mediterranean Operational Oceanography Network, MOON) and the Sea Surface Temperature (SST) satellite data has been developed and is updated every day with the new available data. The network collects temperature, salinity, currents and sea level data. The validation of the biogeochemical forecast products is done by use...
Mechanisms of change in human behaviour - Marchal, Paul; Bartelings, Heleen; Bastardie, François; Batsleer, Jurgen; Delaney, Alyne; Girardin, Raphael; Gloaguen, Pierre; Hamon, Katell; Hoefnagel, Ellen; Jouanneau, Charlène; Mahevas, Stephanie; Nielsen, Rasmus; Piwowarczyk, Joanna; Poos, Jan-jaap; Schulze, Torsten; Rivot, Etienne; Simons, Sarah; Tidd, Alex; Vermard, Youen; Woillez, Mathieu
The scope of this report is to present the science developed within the VECTORS project to improve the understanding of the key processes driving the behaviour of human agents utilising a variety of EU maritime domains. While particular attention has been paid to the spatial interactions between fishing activities and other human uses (e.g., maritime traffic, offshore wind parks, aggregate extractions), the behaviour of non-fishing sectors of activity has also been considered. Various quantitative and semi-qualitative approaches have been pursued to gain better insight into behavioural drivers based on past data, and also forecast how human agents would react if...
Trophic level-based indicators to track fishing impacts across marine ecosystems - Shannon, Lynne; Coll, Marta; Bundy, Alida; Gascuel, Didier; Heymans, Johanna J;; Kleisner, Kristin; Lynam, Christopher; Piroddi, Chiara; Tam, Jorge; Travers-trolet, Morgane; Shin, Yunne
Trophic level (TL)-based indicators have been widely used to examine fishing impacts in aquatic ecosystems and the induced biodiversity changes. However, much debate has ensued regarding discrepancies and challenges arising from the use of landings data from commercial fisheries to calculate TL indicators. Subsequent studies have started to examine survey-based and model-based indicators. In this paper, we undertake an extensive evaluation of a variety of TL indicators across 9 well-studied marine ecosystems by making use of model- as well as surveyand catch-based TL indicators. Using detailed regional information and data on fishing history, fishing intensity, and environmental conditions, we evaluate...
Springtime zooplankton size structure over the continental shelf of the Bay of Biscay - Vandromme, Pierre; Nogueira, Enrique; Huret, Martin; Lopez-urrutia, Angel; Gonzalez-nuevo Gonzalez, G.; Sourisseau, Marc; Petitgas, Pierre
Linking lower and higher trophic levels requires special focus on the essential role played by mid-trophic levels, i.e., the zooplankton. One of the most relevant pieces of information regarding zooplankton in terms of flux of energy lies in its size structure. In this study, an extensive data set of size measurements is presented, covering parts of the western European continental shelf and slope, from the Galician coast to the Ushant front, during the springs from 2005 to 2012. Zooplankton size spectra were estimated using measurements carried out in situ with the Laser Optical Plankton Counter (LOPC) and with an image...
Development and validation of the new ProvBioII float - Leymarie, Edouard; Poteau, Antoine; Andre, Xavier; Besson, F; Brault, Patrice; Claustre, Herve; David, Arnaud; D'Ortenzio, Fabrizio; Dufour, A; Lavigne, Heloise; Le Reste, Serge; Le Traon, Pierre-yves; Migon, Christophe; Nogre, David; Obolensky, G; Penkerc'H, C; Sagot, Jerome; Schaeffer, Christophe; Schmechtig, C; Taillandier, V
In the last ten years, a productive collaboration has grown between the Laboratoire d’Océanographie de Villefranche (LOV), NKE and IFREMER to implement biogeochemical sensors on profiling floats. A first project (2003) was dedicated to the design of the so-called ProvBio floats (models A and B) that consisted of a PROVOR-CTS3 float instrumented with three new optical sensors: a Wetlabs transmissometer (C-Rover), a 3-wavelength Satlantic radiometer (OCR-503) and an “ECO3” Wetlabs sensor, measuring chlorophyll-a fluorescence, colored dissolved organic matter and particle backscattering coefficients (see First Success of ProvBio floats, Coriolis Letter n°5). Then, the integration of biogeochemical sensors continued in the...
JERICO. Report after JERICO Meeting in Brussels 26-27 feb. 2014 - Puillat, Ingrid; Petihakis, Georges; Sparnocchia, Stefania; Farcy, Patrick; Morin, Pascal
The objective of the workshop was to address main issues of JERICO project:
- TNA: overview and formal approval of the selected proposals after the 3rd call
- The JERICO Label document: content and issues
- The JERICO strategy for the future.
The document reports hereafter the synthesis of the discussions
JERICO. Report after 1st General Assembly and JERICO Best Practices Workshop - Oct. 2012 - Farcy, Patrick; Puillat, Ingrid; Petihakis, Georges
The First JERICO General Assembly was organised in Heraklion on 1st & 2nd Oct. 2012. The coordinators took the opportunity of this important meeting, where most of partners were present, to organise other specific workshops and meetings plus individual WP meetings.
Indeed, partners met in an informal way in short parallel WP meetings on Monday morning to prepare for the General Assembly discussions and to coordinate WP activities.
In the afternoon of 1st Oct., a dedicated meeting officially gathered the TNA (Trans National Access) selection panel to debrief and conclude after the first TNA call and selection process. Up until the...
JERICO. WP10 Workshop Report - Nolan, Glenn; Puillat, Ingrid; Farcy, Patrick
A workshop was held on October 16th to 18th 2013 at the Villefranche observatory to outline progress on emerging technologies within the JERICO FP7 project (Work-package 10). A particular focus of the workshop was to invite researchers outside the project consortium to:
• Learn of technology developments within JERICO and
• Present results of their own experiments and technology development
The workshop was a mixture of invited talks and practical demonstrations of some of the technologies involved. There were a total of 24 invited talks and 2 additional practical demonstrations.
The talks focused on 5 key tasks within the emerging technologies area:
10.1 Biological compartments
10.3 Profiling technologies
10.4 Ships/vessels of...
JERICO. ILC Evaluation report Conductivity/Salinity Temperature/Dissolved Oxygen. Annex to Deliverable D #1.6 - Salvetat, Florence
Complemental to the first FCT workshop, the metrology laboratory of Ifremer Centre de Bretagne carried out a calibration experiment from the 8th to the 12th of October 2012. This experiment was promoted by the Jerico European project (JOINT EUROPEAN RESEARCH INFRASTRUCTURE NETWORK FOR COASTAL OBSERVATORIES), in the framework of a collaborative work proposed by the workpackage 4, “Maintenance and Calibration”, and the “Forum for Coastal Technologies”.
The purpose of this experiment was to compare the calibration methods used by different institutes or firms within an inter-laboratory comparison (ILC). In terms of metrology, this comparison will allow the laboratories to assess their...
JERICO. Report after the Strategic workshop # 1 (Heraklion) - Farcy, Patrick; Puillat, Ingrid; Durand, Dominique; Beaume, Nolwenn; Pichard, Maelle
One of the main JERICO objectives is to establish a strategy for the future of the coastal observation. In other words, firstly JERICO has both to perform the state of the art with regards to European coastal observation systems and to help harmonizing technologies and sharing knowledge. Then according to the results of this first stage, the project will deliver a strategic plan to step forward. As a starting point, a roadmap was written in deliverable D1.2 “Rationale and Definitions for a Common Strategy” to give a framework to the project participants and inform about intentions. The following step in...
JERICO. First FCT Activities Report. D#1.6 - Puillat, Ingrid; Aoustin, Yannick; Monbet, Philippe; Nolan, Glenn
This report describes the different actions carried out within the Forum for Coastal Technology framework. FCT’s actions were implemented to better encourage collaboration between public stakeholders (scientists, managers, executives, ..) and private companies to ensure a common and coherent approach of the technical developments for operational oceanographic systems. In that sense, the two main FCT actions for this first JERICO’s year were dedicated to (1) enquire about needs and expectations from companies manufacturing oceanographic instrumentations and sensors companies and (2) the organisation of the first FCT workshop at the Sea Tech Week event in Brest (France, october 2012).
JERICO. Interim Periodic Activity Report. 2nd - Farcy, Patrick; Puillat, Ingrid; Beaume, Nolwenn
The main objectives of the 2nd period were to finalise the “best practices handbooks” for glider (with GROOM), ferrybox and fixed platform. The project organises also workshops on JRA (Villefranche in October 2013) for presenting the mid-term results of WP10. JERICO also launched the second and third calls for Trans National Access.
The mid-term review has been pass successfully in june 2013. The second general Assembly was held in Oslo on the 5th and 6th of May 2014. A dedicated JERICO website has been upgraded. All the submitted deliverables (except the consortium agreement) are available on this site: www.jerico-fp7.eu
Tank test related instrumentation and best practice - Ohana, Jeremy; Bourdier, Sylvain
Marine energy devices are still at development stage and many models are being tested in the different hydrodynamics facilities. Improving the measurements quality of these tests by exchanging between the technical staff of the Marinet partners is one of the Work Package 4 objectives.
This report is an experience feedback from Marinet tests. It was written mostly from Ifremer experience and aim to present the instrumentation techniques needed to carry out quality tank testing.
The first part reviews the typical physical parameters to be measured, gives a short description of the sensors working principle and examples of implementations. The flow...
Euro-Argo. Global Ocean Observing Infrastructure. Float technology analysis. Del. n°4.2.1 - Le Reste, Serge; Gould, John
In this report, we review the status of present-day float technology and consider its likely evolution over the coming years in respect of float design, lifetime, cost, new sensors, improved telecommunications etc. Float manufacturers and their products are first analyzed and the competitiveness of European providers assessed. New and emerging requirements for improved capabilities and performances (communications, lifetime) in particular for marginal seas and additional or improved sensors (e.g. O2, sea ice, density, sea surface temperature and sea surface salinity, bio-optical, plankton), are also detailed. Bio-geochemical and bio-optical sensors are currently under development. Combining such sensors with the mature profiling...
Ostreid herpesvirus type 1 replication and host response in adult Pacific oysters, Crassostrea gigas - Segarra, Amelie; Baillon, Laury; Tourbiez, Delphine; Benabdelmouna, Abdellah; Faury, Nicole; Bourgougnon, Nathalie; Renault, Tristan
Since 2008, massive mortality outbreaks associated with OsHV-1 detection have been reported in Crassostrea gigas spat and juveniles in several countries. Nevertheless, adult oysters do not demonstrate mortality in the field related to OsHV-1 detection and were thus assumed to be more resistant to viral infection. Determining how virus and adult oyster interact is a major goal in understanding why mortality events are not reported among adult Pacific oysters. Dual transcriptomics of virus-host interactions were explored by real-time PCR in adult oysters after a virus injection. Thirty-nine viral genes and five host genes including MyD88, IFI44, IkB2, IAP and Gly...
A new potentially toxic Azadinium species (Dinophyceae) from the Mediterranean Sea, A. dexteroporum sp. nov. - Percopo, Isabella; Siano, Raffaele; Rossi, Rachele; Soprano, Vittorio; Sarno, Diana; Zingone, Adriana
A new photosynthetic planktonic marine dinoflagellate, Azadinium dexteroporum sp. nov., is described from the Gulf of Naples (South Tyrrhenian Sea, Mediterranean Sea). The plate formula of the species, Po, cp, X, 4, 3a, 6, 6C, 5?S, 6'" and 2, is typical for this recently described genus. Azadinium dexteroporum is the smallest rep-resentative of the genus (8.5m average length, 6.2m average width) and shares the presence of a small antapical spine with the type species A.spinosum and with A.polongum. However, it differs from all other Azadinium species for the markedly asymmetrical Po plate and the position of the ventral pore, which...