Naldi, Aurélien; Carneiro, Jorge; Chaouiya, Claudine; Thieffry, Denis
Alternative cell differentiation pathways are believed to arise from the concerted action of signalling pathways and transcriptional regulatory networks. However, the prediction of mammalian cell differentiation from the knowledge of the presence of specific signals and transcriptional factors is still a daunting challenge. In this respect, the vertebrate hematopoietic system, with its many branching differentiation pathways and cell types, is a compelling case study. In this paper, we propose an integrated, comprehensive model of the regulatory network and signalling pathways controlling Th cell differentiation. As most available data are qualitative, we rely on a logical formalism to perform extensive dynamical...
Tarapore, Danesh; Lima, Pedro U; Carneiro, Jorge; Christensen, Anders Lyhne
Fault detection and fault tolerance represent two of the most important and largely unsolved issues in the field of multirobot systems (MRS). Efficient, long-term operation requires an accurate, timely detection, and accommodation of abnormally behaving robots. Most existing approaches to fault-tolerance prescribe a characterization of normal robot behaviours, and train a model to recognize these behaviours. Behaviours unrecognized by the model are consequently labelled abnormal or faulty. MRS employing these models do not transition well to scenarios involving temporal variations in behaviour (e.g., online learning of new behaviours, or in response to environment perturbations). The vertebrate immune system is a...
Guerrero, A.; Espinal, J.; Wood, C. D.; Rendon, J. M.; Carneiro, J.; Martinez-Mekler, G.; Darszon, A.
In many broadcast-spawning marine organisms, oocytes release chemicals that guide conspecific spermatozoa towards them through chemotaxis. In the sea urchin Lytechinus pictus, the chemoattractant peptide speract triggers a train of fluctuations of intracellular Ca(2+) concentration in the sperm flagella. Each transient Ca(2+) elevation leads to a momentary increase in flagellar bending asymmetry, known as a chemotactic turn. Furthermore, chemotaxis requires a precise spatiotemporal coordination between the Ca(2+)-dependent turns and the form of chemoattractant gradient. Spermatozoa that perform Ca(2+)-dependent turns while swimming down the chemoattractant gradient, and conversely suppress turning events while swimming up the gradient, successfully approach the center of...